rs49592246 SNP Detail

Summary

• ID
  rs49592246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39534771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    catttccat tctatggcca aaggggcctc
  acagaaaccc tcaagcatct aggctattac tacaacccga tgctaaagtc ttcttgctga
  agacaacact tacatatgtc attaaacact aagttggact ggtgcccaac tagaaacttc
  R
  cccctactga ctaccattca tggtactggg aggtgctctg catgctactt ctgaaggaaa
  gcagtcacca gttttaccag gttatgtatt aacctggcaa cctacaacag aaactagcct
  gcaagatgct cctgtgcaat agtggcatga                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148968976	ENSMUSSNP2781461	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss319695763	CHEV_1_39552535	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49592246					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39534771 () rs orientation: forward

Symbol	Name	Function Class
Rr409882	regulatory region 409882	1499 bp proximal