rs49592582 SNP Detail

Summary

• ID
  rs49592582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21635370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGGGGC AGCCGTCCTG
  AACTCGGAGA GCCCCGAGTG GTTTTATTTT TGGTCGAGAA ATACAACCAT TCGTGCGAAC
  TTGATGTGAT GTCCTTCCCA CGTGGCTGGA GGGAAGTGTT TTGGAAATAG GGTGCCAGAG
  CTGTAGGGGG TCAGAGTGGG TTTGGGGAGT CCGGTGGGTG CTCTCCCAAG TCAGAGGTGT
  Y
  TTTCAGAGCT ATGTGTGAGG GAATCCAAGA GGAGGGGTCC CATCATTCGT TTTAAGGGCT
  GGGGAGACCC AGGCCCAGCT GTTCAACTTT GGGGTCGCTA GTCGTAGTTA CAGGACTTGG
  GGGTCTCCAC ACTGCACTCA AACCCGGCTA CTGCCGCGTG CCCCAAAACT CCGCCCTAAC
  CCCACCTCCC ACCGCACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss61360190	NES16736560	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs49592582					SNP	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61360190	NES16736560	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21635370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21450	CpG island 21450	within coordinates
Gm26511	predicted gene, 26511	660 bp upstream
Ldlr	low density lipoprotein receptor	within coordinates
Rr206061	regulatory region 206061	within coordinates
Rr401274	regulatory region 401274	399 bp downstream
Rr401275	regulatory region 401275	119 bp upstream
Tssr84044	transcription start site region 84044	459 bp downstream
Tssr84045	transcription start site region 84045	417 bp downstream