rs49592648 SNP Detail

Summary

• ID
  rs49592648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:57167538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGTCAA CCATGAGATC
  CCTCGCTAAA GAAGCAGATC CCCAAGTGCT GGCAATCGCA GCAAGATTAC AGCTGCAAGG
  AGTAGGGCCA GGCCCAGGCT GCTGAGATGT GGGAGCAGTT CTTCCTGCAA ACAGTATGGC
  ATCATGGGAG ACAATGTCCA AAGAGAGCTC TGGCCCTGTG AAGGACCTGC TAAGTCGGCT
  R
  GCTGAAATAG GGATAGGAGC TCAGTCCCTG GGGGAAGTCA TTGACCTGTA CCAGGCCTGT
  GTGGAGTTTG TGTATGACAG CCCACAGAAC AGGTGCTGCC AAGGAAAGAA GGGAAACTCT
  GCTGTATGAA TGGAGGACTA GGACAGAGTC CTCTCTGGTG GAGCGGCCAA AACTGGTGGA
  ACCCCCTGAG CTGGTGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52318238	NES15288234	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49592648					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52318238	NES15288234	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:57167538 () rs orientation: forward

Symbol	Name	Function Class
Gm7001	predicted gene 7001	within coordinates
Gm66529	predicted gene, 66529	960 bp upstream