rs49592969 SNP Detail

Summary

• ID
  rs49592969
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95940346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTTTT GTTTCTATTT
  TAGAGTCCTA AACTATTGTT GTCTTAACTA TTAGGCCAAA TTCAAGCTGG ATGGGTTGAT
  TTGTGCTCAG TGGTGAGTAT TTTCCTATTA AGTTCATCTA CAAGATTAAG CCACTGCTGT
  GTGAGGACAG GCAGTGATAT AAACGGCTTA CTAAGTGCAC AGCTTCACTG AGAGTAAACT
  K
  GATGTGCTCG GAATAGACCA AGCATGCGGT AAAAAGGTCA GAGACAAAAA CACACCAGGT
  CTGTGCCTTC AACACTAGGT TTCTTCAGCC ATTTTTGTAG TTTTTAATCT AACACTGGAG
  CAGGCGTCAG AGCCGTGCAG TCGCTTGAAA ACCTGCAGCA CTTCGGTGTC TTCCAAAACA
  TTGTGTATGC TTCCTGTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144995906	ENSMUSSNP438307	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49592969					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95940346 () rs orientation: forward

Symbol	Name	Function Class
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr277718	regulatory region 277718	255 bp proximal
Rr285448	regulatory region 285448	1655 bp proximal