rs49594253 SNP Detail

Summary

• ID
  rs49594253
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76576854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGGTAGAT AGGTGCCAAA ATCCTGAAGC CAGGATGGAT
  AAAGACTACA GGTTGGCTAG AGATTGCTAA GTCTAGCTTG AAGACAGGGT CTAGTAGGAG
  M
  TAGTAGTCAG GCCCCAGGCC AGCTTTTCTC GCAGAAGCTA GGGCTTTGTT TTCCTCCTTC
  CTGCCCTCTC TTCCCAAGGA CAGTGCTAGG CTGAGGCCAC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63562355	NES17020701	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49594253					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63562355	NES17020701	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76576854 () rs orientation: forward

Symbol	Name	Function Class
Gm56705	predicted gene, 56705	1936 bp downstream
Ppp1r16a	protein phosphatase 1, regulatory subunit 16A	within coordinates
Rr504823	regulatory region 504823	873 bp proximal
Tssr131816	transcription start site region 131816	1396 bp downstream