rs49594259 SNP Detail

Summary

• ID
  rs49594259
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32903822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATACCACG CCCACATGGG
  CCCCACAAGA TTCAAGGATT TTTGTGGAAG TTGGAGCGAA ATGACTGTAA GAGCCAGAAG
  TCTAGAAGAA TAGGACCAAA CAATGCCTTC TGGGTATGGT AGGACCTCTG CTCTAGTGAG
  CTCACAGACG CTGCAGTGAA CCCAAGATAA CACCAAGCTC AAGATAACCA ACATTCCAGC
  M
  CTGGGGAAGG GATGGTGAGC CCTAGCCCCT AGTTGAGGAG TTATTGGCAG CTGATGGTGG
  TGGGAGAGTC AGCTTTCTCT GAGGGTCTGA TCACTGGTAA GCCTTTTGTC CCTGATAGGC
  ACTACACCTA TTTGAATCAG TAAGTTATTT AAAAAAAAAA AAAAGGGAGG GGTGTGGGTA
  AGGAGCCAAT CTGGAAGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145473614	ENSMUSSNP823701	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325362841	CHEV_17_32821793	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49594259					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32903822 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f15	cytochrome P450, family 4, subfamily f, polypeptide 15	783 bp upstream
Rr339615	regulatory region 339615	778 bp proximal
Tssr143733	transcription start site region 143733	737 bp upstream
Tssr143734	transcription start site region 143734	762 bp upstream
Tssr143735	transcription start site region 143735	791 bp upstream
Tssr143736	transcription start site region 143736	807 bp upstream
Tssr143737	transcription start site region 143737	1245 bp upstream