rs49596190 SNP Detail

Summary

• ID
  rs49596190
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194814312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTGATCA TGACCCTGGA
  ACAATGATAT GGTCACCCCA AATTTCATGG AAGCAGTTTC ATAAAGTTTT TGTGGTTTTA
  CAGAGCAGAG AAAGTCACAA ATTAAGGCAA GTTTAAAATA TATTGTTGGG TACATACAAG
  AAGCAGGTAG TGGAAGCTTT TCTATAGGCT CAGGATGACT CTAATGGCAC TCGGCTTTTG
  T
  ATTGGTAGAA GCTAGTTGCC TGATAAGTCA GTAGATTCTA AAAGGTTGTT TGTGGTTTTG
  TTTGTTTGTT TGTTTGTTTG TTTTGTATCT ATTGTATCAT GATGTTAGTT CTGACTTAGC
  CCAAGATAAG GTAATTATTG GTCTCTGGAC CAGCAAAATT GCAATCTCTC CAGAGTACTG
  AAATTCTAAT CAGCCAATAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146544270	ENSMUSSNP367466	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49596190					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194814312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1251	CpG island 1251	634 bp distal
Cr1l	complement C3b/C4b receptor 1 like	434 bp upstream
Gm32313	predicted gene, 32313	within coordinates
Rr29235	regulatory region 29235	within coordinates
Rr372684	regulatory region 372684	96 bp downstream
Rr396746	regulatory region 396746	1442 bp downstream
Tssr383	transcription start site region 383	575 bp upstream
Tssr10864	transcription start site region 10864	360 bp downstream
Tssr15870	transcription start site region 15870	597 bp upstream
Tssr15871	transcription start site region 15871	551 bp upstream
Tssr15872	transcription start site region 15872	500 bp upstream
Tssr15873	transcription start site region 15873	470 bp upstream
Tssr15874	transcription start site region 15874	416 bp upstream