rs49596648 SNP Detail

Summary

• ID
  rs49596648
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121392073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGCTAC CGGTCGGTTG
  CACATGCAGC ACTAATCTGA CTCAGGTTAT ATTTAAAACG GGATGGGTAC TGCTGCTGAA
  AGGCTCAGTG AGAAATGGTG AGTTCAATTC CAGGGCCCAT GTGGTGGAAG GAGAGAACAC
  ACAGTGAAAA ACTGTCCTCT GACCATCTCG TGTGTGCTGT GGTATGTGTG ACCACTACAT
  A
  CAAAATACAT AAATATAGTT TAAAAATGTT CTAGCCATGT GGTGGCGGCA CATGCCTTTA
  ATACCAACAC TGAGGAGGCA GAAGCAGGCA GAGTTTGAGG CCCAGCCTGC TCTACAGAGT
  GAGTTCCAGG ATAGCCAGGG CTACACAGAG AAACCCTGTC TCTCTCTCTC AAAAAATCTC
  TCTCAAAAAA AAAAAAAAAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147391130	ENSMUSSNP4576136	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49596648					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121392073 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563849	regulatory region 563849			1612 bp proximal