rs49596823 SNP Detail

Summary

• ID
  rs49596823
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58661815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCC TGGGACACTT AGGGTATGGG
  A
  TATGGAGTTA TGCAGGAATC ATGGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146566697	ENSMUSSNP4321293	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss325872638	CHEV_19_58747873	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49596823					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58661815 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	1186 bp proximal
Tssr5571	transcription start site region 5571	256 bp downstream
Tssr157263	transcription start site region 157263	1662 bp downstream
Tssr157264	transcription start site region 157264	1604 bp downstream
Tssr157265	transcription start site region 157265	1552 bp downstream
Tssr157266	transcription start site region 157266	298 bp downstream
Tssr157267	transcription start site region 157267	279 bp downstream
Tssr157268	transcription start site region 157268	225 bp downstream
Tssr157269	transcription start site region 157269	358 bp upstream
Tssr157270	transcription start site region 157270	421 bp upstream
Tssr157271	transcription start site region 157271	1673 bp upstream
Tssr157272	transcription start site region 157272	1684 bp upstream
Tssr159957	transcription start site region 159957	1644 bp upstream
Tssr159958	transcription start site region 159958	1517 bp upstream
Tssr159959	transcription start site region 159959	246 bp upstream
Tssr159960	transcription start site region 159960	198 bp upstream
Tssr159961	transcription start site region 159961	1765 bp downstream