rs49597923 SNP Detail

Summary

• ID
  rs49597923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30093509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATT ACTGGACTGT ACTACCATAC
  Y
  CGGCTAAGAC ACGTAAATTT AATTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148676541	ENSMUSSNP6879109	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322133916	CHEV_7_31179103	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49597923					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30093509 () rs orientation: forward

Symbol	Name	Function Class
Gm42376	predicted gene, 42376	within coordinates
Rr155978	regulatory region 155978	1709 bp distal
Rr155979	regulatory region 155979	892 bp proximal
Tssr2182	transcription start site region 2182	286 bp downstream
Tssr2183	transcription start site region 2183	742 bp upstream
Tssr71732	transcription start site region 71732	224 bp downstream
Tssr71733	transcription start site region 71733	346 bp downstream
Tssr71734	transcription start site region 71734	438 bp downstream
Tssr71735	transcription start site region 71735	480 bp downstream