rs49598330 SNP Detail

Summary

• ID
  rs49598330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36531919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTCTGA GGTTGTGAGC
  AAACTCCAAG TAAAAAGAGC AAAAGTCTTA TAACCTCTGC TACTCCGTAA CATAGGTTTG
  TTCGTGGAAT GTGCTTTCAA GCCCTCCTCA GGTGTAATAA TAGGAGTGGG TTTACTTTAG
  ATTACCCATC AACTTTCCCA CTATTATTCA GAGTGTGGCT TCTAAGCACG AGTTGTCCTC
  Y
  TGACTGTATA TAGCCTGAGC TCCTGTGTCC TTGCCCTTGT GACAACTTTA TACAACTTGA
  ACTCAAGTGA ACTTTGCTCA CATGACCTTG CTTAACACTC AGAGTGCCTT TAGAATATAA
  GTTGTTTGAG GCTCTGAATA AAAATGGCTA CTGCATTAGA CTTTAGTCTG TCTAAGTTTT
  ACACTCTACC TTCCAAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61597403	NES17553384	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	T	C	C	C	C		C	C	C	C		T
ss324008671	CHEV_12_37208507	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49598330					SNP	C	T	C	T	T	T	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61597403	NES17553384	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36531919 () rs orientation: forward

Symbol	Name	Function Class
Crppa	CDP-L-ribitol pyrophosphorylase A	Intron
Rr387069	regulatory region 387069	within coordinates
Rr465183	regulatory region 465183	1505 bp proximal