rs49599318 SNP Detail

Summary

• ID
  rs49599318
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24033720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTA ATGCATTGTT TACATTTTCT
  C
  GTTTCTCTGA ATTACTACTT GAGGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145333342	ENSMUSSNP3813742	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325327503	CHEV_17_23951713	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49599318					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24033720 () rs orientation: forward

Symbol	Name	Function Class
Gm49911	predicted gene, 49911	1246 bp upstream
Rr340683	regulatory region 340683	881 bp proximal
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142964	transcription start site region 142964	1280 bp downstream
Tssr142965	transcription start site region 142965	370 bp upstream
Tssr142966	transcription start site region 142966	450 bp upstream
Tssr142967	transcription start site region 142967	526 bp upstream
Tssr142968	transcription start site region 142968	541 bp upstream
Tssr142969	transcription start site region 142969	1309 bp upstream
Tssr142970	transcription start site region 142970	1338 bp upstream
Tssr142971	transcription start site region 142971	1406 bp upstream
Tssr142972	transcription start site region 142972	1451 bp upstream
Tssr142973	transcription start site region 142973	1465 bp upstream
Tssr142974	transcription start site region 142974	1502 bp upstream
Tssr142975	transcription start site region 142975	1526 bp upstream
Tssr142976	transcription start site region 142976	1554 bp upstream
Tssr142977	transcription start site region 142977	1612 bp upstream
Tssr142978	transcription start site region 142978	1657 bp upstream
Tssr146670	transcription start site region 146670	495 bp downstream