rs49599457 SNP Detail

Summary

• ID
  rs49599457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12195810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACCTG TCTGTATGAC
  ACATGAATTC TTAGTGCCCA GTGGCCAGAA CAGAAAACTG GATCCTATGG AATTGGAGTT
  ACAGAAAGTT GTGAGCTGCC ACGTGGGTGC TGGGAACTGA ACCCAGGTCC TCTGGAAAAG
  CAGCCAGTGC TCTTAACCAC AAGCCATTTT TGCAGCCCTT TCTTTCATTG AACATTTAAC
  Y
  CATTCAATGT CTGCTGGAGA GAAATGATTC AGCAGAGGAG ATACCGAGCC TGTCTCTGCT
  CTTGTGGACT GCTGTGTGTG CTTCAGCTTC CTTAATGGCT TTCAGATGGA TGTTAGTGCT
  CACCCAGAAA CATGGGAGAA ATCCAAGGAG GACTAGAAGA AGGTTTTAGA TAAACTACTA
  TCTAAAGAGA AATGCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61744056	NES17670742	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49599457					SNP	C	C	T	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61744056	NES17670742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12195810 () rs orientation: forward

Symbol	Name	Function Class
Gm10336	predicted gene 10336	1793 bp downstream
Gm47322	predicted gene, 47322	1643 bp upstream
Mtr	5-methyltetrahydrofolate-homocysteine methyltransferase	1788 bp downstream