rs49600394 SNP Detail

Summary

• ID
  rs49600394
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:126768347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACCACAC CTAGATCTGG
  GACTTGCTTT TTCCCAGGTT GATCTTAAAC TCAGAGATCT CCCTGCCTCA GTCTCCTGGG
  ATTAAAGGAG TGTGCTGCCT TGCCTGGGCC TAAGCTTTTC ATGGACTCTA TGCCTCAAAA
  TCTCCATGCC AAGTTCCAGG TCTGAAACGC GTGTCTTCCA GCCTCAAGAT CTGGATCACA
  G
  ATGAGCCCTT CGATTCTGGA TTGTAGTTCA TTCCAGATAG CGTCAAGTTG ACAACCAGGA
  ATGACCATTG CATAGCCCTT CAGTGAATTT GCATGAGTCT TTGTGGCTCA GGTCCCCAAC
  TGTTCTGTGG CTATTACCTT CAGCAGGTAC CCCCTAAAAC TTCTCTGCAA GAGCAATATA
  TAAAGTAAAA AAGATAGCTA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133625955	ENSMUSSNP3657070	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49600394					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:126768347 () rs orientation: forward

Symbol	Name	Function Class
Gm29788	predicted gene, 29788	1065 bp downstream
Gm67331	predicted gene, 67331	within coordinates
Rr638910	regulatory region 638910	634 bp proximal
Rr638911	regulatory region 638911	704 bp proximal