rs49600423 SNP Detail

Summary

• ID
  rs49600423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134294688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACGCCCT ACATGTATAA
  GGGACGGATG TGAGGAAGGC TTAGCTCCCT GGCAGACCGG CCTGCCTGGT CTGAGCAGTG
  ACCTGATCTG GATGCAGACA TACCATATTT TCTTTCGAAC AACTCTTCAA CTTGTTTCCG
  TAGGTCAGTG ATGCGTGCGT TCCATTTCTC TGAAAATGAG AGGGAACCAT TTTCAGTAAA
  Y
  AGGGCAGCTT GGCACTCTAC TCTCTAGAGC AGACAACCTA TCTATCAGCC CACCTCAGTC
  GGGGTTTTTT CCTGCCTCCC CAAGGGTCTT TCCTTTTTCT GTGTTTCTTG GGAACAGCTG
  GAGACTGAAG GACATTTGAA ACTTGTTTTT AGAACAGTAC CCAGCCCGCC TCTTTGGAGC
  TTTTAAACTT CTGAAGATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60846272	NES16011305	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49600423					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846272	NES16011305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134294688 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	1231 bp downstream
Gtf2i	general transcription factor II I	within coordinates
Tssr53619	transcription start site region 53619	1401 bp upstream
Tssr53620	transcription start site region 53620	243 bp downstream
Tssr53621	transcription start site region 53621	750 bp downstream