rs49600663 SNP Detail

Summary

• ID
  rs49600663
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60057372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAAAATA ATGCAATTGA
  TGGGGAAATA TGTCTGACAC TTACAGTCAA TTCAAAAGGT TTAGGCTAAA TATACATGCA
  TGGAAAGATT AATTCTATTT TTCAAAGAAG AGTGCATATG GCATCTAACT TATGAAATAG
  ATAAGCATAA TTTTCACAGA AAAAGATTTC AGATGTAATA GTCATGAGCC ATCATATGTC
  R
  TAAATATCAA ACATGTAGTT AGCATATACC AAGGAGATTA TCTATATATA TAATATATAC
  ATATATCAAG AAAACATATT AAGCATGTTG GCACAAGGAA GAAACACCCA AATGAAATAA
  TCTATGCTTG CCTTGCTGAC AATTCAGAAG ACCTCGTTGT AGTTACAATG CCATCATATC
  AAATTACTCC CATTAGCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147991236	ENSMUSSNP1139957	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49600663					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60057372 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	1294 bp upstream
Rr502965	regulatory region 502965	1845 bp proximal
Tssr4605	transcription start site region 4605	1681 bp downstream
Tssr134460	transcription start site region 134460	1363 bp downstream
Tssr134461	transcription start site region 134461	1504 bp downstream
Tssr134462	transcription start site region 134462	1591 bp downstream
Tssr134463	transcription start site region 134463	1651 bp downstream
Tssr134464	transcription start site region 134464	1745 bp downstream
Tssr134465	transcription start site region 134465	1799 bp downstream
Tssr134466	transcription start site region 134466	1812 bp downstream
Tssr134467	transcription start site region 134467	1848 bp downstream
Tssr134468	transcription start site region 134468	1875 bp downstream
Tssr134469	transcription start site region 134469	1906 bp downstream