rs49600800 SNP Detail

Summary

• ID
  rs49600800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24714314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTC CCTTTTCTGG CACACAGGTG
  Y
  GCATGCAGAC AGAGCACTCA TACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148095125	ENSMUSSNP5018878	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321495915	CHEV_5_24015134	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49600800					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24714314 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608340	regulatory region 608340	705 bp distal
Rr608341	regulatory region 608341	1428 bp proximal
Rr608342	regulatory region 608342	1501 bp proximal
Rr608343	regulatory region 608343	1681 bp proximal