rs49600876 SNP Detail

Summary

• ID
  rs49600876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20412446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGAGATTT TACTCTTAGT CTCTATTACT GTATTTATCA
  AGGCAATATG TTTGCTGAAA TAAATAATGT CCATGTGAGG TTCAAATGCA AGTAAGGTTT
  Y
  CAGTCATTTT TTTTTTCTTT CAAACTATTT CTTGAGCTCT TAAACTAATG TGAATTAAAT
  GTGCTCTTTA TGGGAGGTAC TGTGCCAAAT GAAGAAAACA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63231365	NES17473233	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49600876					SNP	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63231365	NES17473233	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20412446 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	815 bp proximal
Gm32689	predicted gene, 32689	within coordinates
Rr356916	regulatory region 356916	46 bp distal
Rr356917	regulatory region 356917	1955 bp proximal
Rr361508	regulatory region 361508	1968 bp proximal
Rr364130	regulatory region 364130	176 bp distal