rs49601148 SNP Detail

Summary

• ID
  rs49601148
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73189285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAACAAGT CTAACTCTGG
  GTCTTTCCTG ACTGTCAAAT GCATTGAAGC TTCCTATGCC TTCACACTGT GGCTTTCCAG
  AGAATTCGTC TTGCATTAGA AGCTTTCTGT CCTTGACCCA GTAATGACAA AAGCAACTTA
  AAAGAGATCC AAAATTGTAA CTACTCAATT TGTATAGAAA TTTGGAAATG TATTTTTTAA
  M
  GCAAGGCTCA AAATATTTTT AGTAAAGAGT AAACTCATCA ATTTGTAAAA AACTATATTC
  CACACTTCAA AATTTAAAAG CTAATTTAAA CAAGAATTTT ATGTAAAATT ATAAAGTAAA
  ATCAAAATTG GATCATATAC CAATCACATT CTTGTTAGCT GCATGATTTT AAAACTATGA
  CATGACAATT CTTAAGAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61020022	NES16105292	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49601148					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020022	NES16105292	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73189285 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	261 bp downstream
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Cpgi19266	CpG island 19266	1379 bp distal
Gm44686	predicted gene 44686	within coordinates
Rr167999	regulatory region 167999	within coordinates
Rr380950	regulatory region 380950	823 bp downstream
Rr380951	regulatory region 380951	1775 bp upstream
Tssr67202	transcription start site region 67202	1567 bp downstream
Tssr67203	transcription start site region 67203	1479 bp downstream
Tssr67204	transcription start site region 67204	1445 bp downstream
Tssr67205	transcription start site region 67205	159 bp downstream
Tssr72947	transcription start site region 72947	1771 bp upstream
Tssr72948	transcription start site region 72948	264 bp upstream
Tssr72949	transcription start site region 72949	1351 bp downstream
Tssr72950	transcription start site region 72950	1548 bp downstream
Tssr72951	transcription start site region 72951	1888 bp downstream
Tssr72952	transcription start site region 72952	1959 bp downstream