rs49602069 SNP Detail

Summary

• ID
  rs49602069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14915967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACATTTT TTGAAGGAAG
  ATGCATTGCT TTGAGTCACC AAATTAATGG CAAAAACCTT CATTTTTAAC TAAAATAATT
  AGACTCAAAT TTATATTTGG ATTCAAAGCC TGAAGGGAGA CGTGACCAGG CTCCCTGAAG
  AGTTTTCAGT GCCTAGCCGC CCCTCTGCTA CTTACAGTGG GACCCTTTAT GGCAGAGATT
  Y
  CAGGGTAGAG CAGAGGGCAT AGGGTACAGG ATGGGCATAC TCTGCAGCCT GTAGGGCTCC
  CTGCTGCTAG TAAAGTGTAG AAAGACTTCA CCTCTGAAAT ATCACACACA CACACACACA
  CACACACACA CACAGACACA CAGACAAATC AAGAGAGTTT GATGGAAGAG CTGACAGTAC
  ATGATATGCA ATGAGTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60540255	NES16561367	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49602069					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60540255	NES16561367	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14915967 () rs orientation: forward

Symbol	Name	Function Class
Thbs2	thrombospondin 2	1470 bp upstream
Tssr146500	transcription start site region 146500	1606 bp upstream
Tssr146501	transcription start site region 146501	1463 bp upstream