rs49602430 SNP Detail

Summary

• ID
  rs49602430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:159116257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATCTAT GGTTGTTAAA
  TTGCTTTAGA ATAAAGGGCT GAAAATAGAC ACACATCTGA CTCATCAAAT GGTCATATAG
  GTTTACAAGC TAGAGCAAAT CTGTATTTGG CAAATTTATC AGCAAGCAAA GCATTTGAAT
  TTTCTTACTT TAACTTTTTT TTAATGAAAA AAGAAACCCA GAAATTTCCT CCCTTTCCTT
  Y
  CTTTCATGAC ATAAATCATG GAAAACATTG ACCACTTTCA TGGGAAAAAA TCCTGATCAT
  ATTTATTCTT TGCTCAGAAC AGGGTTTAAA TAAAATGGCC CATCAGAACC CATTGCTTCT
  TCTCTCCTCA CATTTGACCT GGGGAAACAT TACTTACTTG GTTAGTGGAG ATGGAGTTGA
  GAAAAACAAA CCTACTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss134520450	ENSMUSSNP595353	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49602430					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:159116257 () rs orientation: forward

Symbol	Name	Function Class
Gm39548	predicted gene, 39548	within coordinates