rs49603029 SNP Detail

Summary

• ID
  rs49603029
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:11369436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTTTAGT TATACTCGAT
  CTCTTTAGAA GAGTCCACAG ACTTGATTAA GGCCTGATTC TGGCTTTCCC AGAACCTGAG
  TGGGTTTATT TGATATCCAT CACAGCAGGG TGCTTCTCTG TGAAACAGGA GAACCACTTT
  CCAGGTGTGC TGAAGAGTCA GGTGGGTTAT GTAGGACACT ATTAAGACTT TGTCACTGGG
  M
  AAGCCTGTTT CCAAGTCCAC TGTTCTAGTA GGGTTCTCTA TAGGATGAAT GGTGAAAATC
  ACTAATAGAA CATTCTGGGG AACCCCTTTG GAAGATTCCA ATTAGCAGGG GCTGGTTTGC
  TCACCAGCAG AACAGTTGGC TTTGAAGTCA ACCTCAGGTG AAGTGGATAA TGGGTATTTA
  ATAACTATAT TCTTTAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63647816	NES17057524	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49603029					SNP	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63647816	NES17057524	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11369436 () rs orientation: forward

Symbol	Name	Function Class
5830487K18Rik	RIKEN cDNA 5830487K18 gene	412 bp downstream
Rr391334	regulatory region 391334	177 bp upstream
Snx29	sorting nexin 29	Intron