rs49603857 SNP Detail

Summary

• ID
  rs49603857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119358262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGGGATTA AAGGCGTGCG CCAACATTGC CCAGCTGGCC
  TGCACTTTTC TGAAGTGAAA AAGAGAGCAG TGTAACTGGG GAAGAGGGGA GTTGGGGAGG
  Y
  TACTAGGAGG AGTGGAGGGA GGAAAGACTG CAGTTGGAAT GCACTGAAAA CAGAAAAGAA
  GAAAAAGAAA AGGAAACATT AAGGGTTGCT GTGGACCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145815219	ENSMUSSNP3695109	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49603857					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119358262 () rs orientation: forward

Symbol	Name	Function Class
Acsm3	acyl-CoA synthetase medium-chain family member 3	1844 bp upstream
Gm74181	predicted gene, 74181	336 bp downstream
Rr654652	regulatory region 654652	1462 bp proximal
Rr654653	regulatory region 654653	1896 bp proximal
Tssr68754	transcription start site region 68754	1879 bp upstream
Tssr68755	transcription start site region 68755	1904 bp upstream
Tssr68756	transcription start site region 68756	1942 bp upstream
Tssr74499	transcription start site region 74499	1756 bp downstream