rs49604021 SNP Detail

Summary

• ID
  rs49604021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132901192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC TGAGATTAAA GGCATAGGCC
  Y
  CCATACCTGG TCAAAACCAA AACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147484344	ENSMUSSNP5095255	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321339083	CHEV_4_132729796	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49604021					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132901192 () rs orientation: forward

Symbol	Name	Function Class
Gm69072	predicted gene, 69072	within coordinates
Rr367728	regulatory region 367728	425 bp upstream
Rr601217	regulatory region 601217	288 bp proximal
Tssr1326	transcription start site region 1326	1188 bp downstream
Tssr39456	transcription start site region 39456	590 bp upstream
Tssr39457	transcription start site region 39457	644 bp upstream
Tssr39458	transcription start site region 39458	658 bp upstream
Wasf2	WASP family, member 2	within coordinates