rs49606312 SNP Detail

Summary

• ID
  rs49606312
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:71997069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGATCTCT AATGACTGAA
  TTTCCTGCCA GAAAAAAGCT CTAGAGTCTT AAACAAAGAA CAAAATCTAA ACACTCAATA
  GTGTAACATT CACAACACCC AGAATCCAAA GTTCTGTCTT TCCCTATTTC TGGGGATTCA
  AAATGGTTTG CCTTTAGACA TACCATTAGA GAGTTTCCTG CAAAGCAGCT TCCAATAAAA
  R
  CAGGCTGTCC TTCAAGCTTA ATTAATAGCC TTTTGGGTTA ATAGCATTTT TCTTTTTAGA
  CCAAGAGCAG GGAAAGTACA ATGGCCAACT GACACAGACT CAGGTACACT AGGAGAGAAT
  AATGCCATGA GATATTATAA AGTTTTTTTT TTTTTGGTTT TTCGAGACAG AGTTTCTCTG
  TATAACCCTG GCTGTCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61420206	NES16798325	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49606312					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420206	NES16798325	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:71997069 () rs orientation: forward

Symbol	Name	Function Class
Tcf12	transcription factor 12	within coordinates
Tssr90471	transcription start site region 90471	467 bp downstream
Tssr90472	transcription start site region 90472	607 bp downstream