rs49607129 SNP Detail

Summary

• ID
  rs49607129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:4376235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGACCAT AACCAAAAGC
  AACCAGGGAA GGAAAGAATT TATTTGAATT ACATATTTTG ACCCACTGTT CACTGAGGAA
  AGCCAAGGAG GAATTCCAAC TGGTCAGAAG TCTGGGGCAG AAGCTTGCTC CTCGTGGCTT
  GCTTAATCTG CTTGTTTTAT AATCCAGGGG CACAAAGCCA AGATGGTACC ACCTTCAATA
  Y
  CAATCACTCA TTAAAGAAAA TGCTTTACAG ATTTGCCTGC AACACAATCT TGATAGAGCC
  ATTTTCTCAG TTGAAGTTCT CTTGTTTCTG ATGACGCTAA AACTAGCCAG TGTAATATTC
  ATAGGATGTT GCCAGAGGCT GACTACACTC CAGCCTAATG AACAGCTGAT TTTCCTGGTT
  CTCAGAACCC TTTGCCTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146573597	ENSMUSSNP600569	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49607129					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:4376235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9667	CpG island 9667	62 bp distal
Gm26865	predicted gene, 26865	within coordinates
Gm50096	predicted gene, 50096	within coordinates
Mtpap	mitochondrial poly(A) polymerase	within coordinates
Rr370335	regulatory region 370335	506 bp downstream
Rr533218	regulatory region 533218	633 bp distal
Rr533219	regulatory region 533219	443 bp distal
Tssr149909	transcription start site region 149909	612 bp downstream