rs49607512 SNP Detail

Summary

• ID
  rs49607512
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42456891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCAGAAG GCTGGGGAGT
  CCTTTCCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GATCTCCCTG CAGGTGGATA AGCCAGCCAG
  GGTAAGGGTG AAGTCCTGTT AGGCACGGAG AACAAAGGAA GCTCTTTTCT TTCTGTTTGT
  S
  TTTCTGGCTA AAGGCAGTTT TATGCCTTGT CTGCTTCTAT TTGCGCTGCT AGATCTGACC
  TGAATACTAG GGTGCAGGTG CTTGCTCTGG ACGCCTGAAG AAAGATATTA CTACCAATCT
  GACCCTCTCT TCTCTTCACA GCTGTCTTGG GAGCCGAACT CAGCACCGGA GCTGAGAATG
  GAGTGCAGAG CCCCCCTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52629855	NES15518471	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49607512					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52629855	NES15518471	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42456891 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5505	CpG island 5505	1409 bp distal
Edn1	endothelin 1	within coordinates
Gm47118	predicted gene, 47118	within coordinates
Gm60910	predicted gene, 60910	1738 bp upstream
Rr388326	regulatory region 388326	1388 bp downstream
Rr478146	regulatory region 478146	1929 bp distal
Rr478147	regulatory region 478147	761 bp distal
Rr478148	regulatory region 478148	312 bp proximal
Tssr119438	transcription start site region 119438	1980 bp downstream
Tssr119439	transcription start site region 119439	1924 bp downstream
Tssr119440	transcription start site region 119440	1897 bp downstream
Tssr119441	transcription start site region 119441	1789 bp downstream
Tssr119442	transcription start site region 119442	1602 bp downstream
Tssr119443	transcription start site region 119443	1581 bp downstream
Tssr119444	transcription start site region 119444	1448 bp downstream
Tssr119445	transcription start site region 119445	1612 bp upstream