rs49607583 SNP Detail

Summary

• ID
  rs49607583
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87686586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT AGCATAGGAA ATGAGGTGGG
  A
  GAAGGCTCGG ATCTAAGATC ATGGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132512871	ENSMUSSNP4689872	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323773653	CHEV_11_87609262	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49607583					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87686586 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr370606	regulatory region 370606	1213 bp downstream
Rr453904	regulatory region 453904	391 bp proximal
Rr453905	regulatory region 453905	445 bp proximal
Tssr3631	transcription start site region 3631	992 bp downstream
Tssr3632	transcription start site region 3632	492 bp downstream
Tssr3633	transcription start site region 3633	553 bp upstream
Tssr103981	transcription start site region 103981	1955 bp downstream
Tssr103982	transcription start site region 103982	1932 bp downstream
Tssr103983	transcription start site region 103983	1913 bp downstream
Tssr103984	transcription start site region 103984	1728 bp downstream
Tssr103985	transcription start site region 103985	1703 bp downstream
Tssr103986	transcription start site region 103986	1689 bp downstream
Tssr103987	transcription start site region 103987	1548 bp downstream
Tssr103988	transcription start site region 103988	1224 bp downstream
Tssr103989	transcription start site region 103989	945 bp downstream
Tssr103990	transcription start site region 103990	533 bp downstream
Tssr103991	transcription start site region 103991	460 bp downstream
Tssr103992	transcription start site region 103992	442 bp downstream
Tssr103993	transcription start site region 103993	23 bp upstream
Tssr103994	transcription start site region 103994	95 bp upstream
Tssr103995	transcription start site region 103995	271 bp upstream
Tssr103996	transcription start site region 103996	323 bp upstream
Tssr103997	transcription start site region 103997	493 bp upstream
Tssr103998	transcription start site region 103998	600 bp upstream
Tssr103999	transcription start site region 103999	1556 bp upstream
Tssr104000	transcription start site region 104000	1668 bp upstream
Tssr104001	transcription start site region 104001	1698 bp upstream
Tssr104002	transcription start site region 104002	1724 bp upstream
Tssr104003	transcription start site region 104003	1797 bp upstream
Tssr104004	transcription start site region 104004	1823 bp upstream
Tssr104005	transcription start site region 104005	1847 bp upstream
Tssr109976	transcription start site region 109976	661 bp downstream
Tssr109977	transcription start site region 109977	1585 bp downstream
Tssr109978	transcription start site region 109978	1613 bp downstream
Tssr109979	transcription start site region 109979	1665 bp downstream
Tssr109980	transcription start site region 109980	1853 bp downstream