rs49608648 SNP Detail

Summary

• ID
  rs49608648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:106094580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACATATG TTTGAAATAT
  AAGTCTTTCT CAACAAAGTG AATAAGCCTA TATCAAATTG AATAATTTTA ACACTTTAAC
  CCAAATTTCA CTGATTGGTC ATAATTTATA CAGATATACA GTAAACAGAT ATTGAACAGA
  ACATCTTATA AAGACTACTA CCATGCAGAC ACAAATATAT TTTTACTATT CCCTAATTAA
  Y
  GGTTTGACTG GTTTCTGAAA AGGAAACAAT AGCCACTATT TCTATTATGA ATTTTTTTCT
  TATTTTAATA TAGGGTCTTG ATATGGTTCC CCAGGTTGGC CTTGAATTCA TGATTTTCTT
  GGCTCAGCTT CCCAACAGGC CTAGATTACA GATATGTACC AACACATACA CAGCATGAAA
  AAATACATGA ATATATATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146767818	ENSMUSSNP6016116	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49608648					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:106094580 () rs orientation: forward

Symbol	Name	Function Class
Gm48970	predicted gene, 48970	within coordinates
Gm63380	predicted gene, 63380	491 bp downstream
Rr294089	regulatory region 294089	1729 bp proximal
Rr390111	regulatory region 390111	1070 bp upstream