rs49609406 SNP Detail

Summary

• ID
  rs49609406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16048772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCAAAGC CAGCCTGGGC
  AACCTAGTGA GTGATATTCT GCTTCAGAAA TAGTCTTTGA AGTGGCTCAG AGGATAAAGG
  TGCTTGCTAC CAAAACTGAT GAACAGAGTT CGATTCCCAG GACCCACTTA GTAAAAGTCA
  AGAGTCTAAT CTTACATAGT GTTCTCTAAC CTCCACATGT GCACACACAG ATCCCCCCTC
  Y
  CTCTCTCTTT CTCATACACA CACAGACACA CACACACACA CACACACACA CACACACACA
  CATTAATGGT TAAGAGAACT CTTACAGAGA ACCAGGGTCA GGTTCCCAGC TGACAACTGC
  CTGTAATTCC AGGTCCAGGG ATCCAATGCC TTCTGGTATT TGCCAGCACG TACACATTAG
  TTTGTTTGTT AGTTAGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148383622	ENSMUSSNP2938603	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49609406					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16048772 () rs orientation: forward

Symbol	Name	Function Class
Bbc3	BCL2 binding component 3	within coordinates
Cpgi18372	CpG island 18372	1695 bp distal
Cpgi18373	CpG island 18373	335 bp distal
Rr167075	regulatory region 167075	within coordinates
Rr380460	regulatory region 380460	252 bp upstream
Tssr64601	transcription start site region 64601	1172 bp downstream
Tssr64602	transcription start site region 64602	754 bp upstream
Tssr70736	transcription start site region 70736	860 bp upstream
Tssr70737	transcription start site region 70737	798 bp upstream
Tssr70738	transcription start site region 70738	784 bp upstream