rs49609576 SNP Detail

Summary

• ID
  rs49609576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50195018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCTCTA GTACTGACAC
  ACTGAGACAG CATGCACTTC AGTTTCTTAT AGGAAACCCA CAGCTGACCT GGAAGAAAGC
  ACCTTGTATT TTCTAGTCTG TTCTTGATAG ATGGCATGGC TGTCATAAAT AAATCACAGT
  GGACGTTGTA CTGTTGGGAC ACTCTGAAGA GAAGCCTTTG AGTTAATGTT TGTCTGTTTG
  Y
  TTTTAGTTTG TGACTCACAA ATCTAAAGCT AGGCTGTAAT AGTCACACCA GGTTGTCCAT
  TAACTGTTAC ATCTCTGCTT ATCATTAATA ACATCACCCT GCCAAGATGT GGAGTTGCCT
  AGGAGATGGC TTCTGTCTGC ATGTATCTAA AGGTAATATC CATGCTGCTA GCTACTTTGC
  TCATCACTGT GGCAAAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146531298	ENSMUSSNP461197	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49609576					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50195018 () rs orientation: forward

Symbol	Name	Function Class
Gm13483	predicted gene 13483	within coordinates
Gm74801	predicted gene, 74801	36 bp upstream
Rr556732	regulatory region 556732	within coordinates
Rr556733	regulatory region 556733	279 bp proximal
Rr556734	regulatory region 556734	1682 bp proximal
Rr556735	regulatory region 556735	1796 bp proximal
Rr556736	regulatory region 556736	1914 bp proximal
Tssr17697	transcription start site region 17697	1714 bp downstream