rs49609791 SNP Detail

Summary

• ID
  rs49609791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98939467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTTCCAG CCTCATTGTC CGGACAGGGA GCTCTCTCTG
  CCCTCACCTG ACCTATGCAT CCTCTCTTCT GCTGCCCCCC TTCATCGTGG TCCTGAGGGG
  Y
  GAGTGGGCAG TAGCAAAACT CTTCCAGTGT GAGCAAGGAG AGACGGAGGA ATGAATGTGC
  GCTCAAGCGT GCAGGCACCC ACAGAAAGCT GCCAGGCCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148463590	ENSMUSSNP4457986	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325079653	CHEV_15_98872017	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49609791					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98939467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	1216 bp distal
Gm41399	predicted gene, 41399	within coordinates
Gm62755	predicted gene, 62755	within coordinates
Rr509290	regulatory region 509290	1058 bp distal
Rr509291	regulatory region 509291	1080 bp distal
Rr509292	regulatory region 509292	288 bp distal
Rr509293	regulatory region 509293	866 bp proximal