rs49609836 SNP Detail

Summary

• ID
  rs49609836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85148125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACGCTCT ATGTTTGAAA
  TGAACCGGCA GTGCTGCCGT ATGCAGTGAC ATGGGCAGCG ATGTAGTAGT CACAGCCTCA
  GAAGCAGCTT CATGGCTCTC CTGAGATTTG GAGAAATGGA GGATCAGCTT ACTCCCCAAA
  CACAGAAGTG GATTAGGAAG AAAACAAAAG TCCTGGAACG CTGTCTCTCA GAAAAGCACC
  R
  TGACCATTGT GTGCATCGCT TTCTCCCAGA CTACTTCCCT GTGTGCATAC TTAGAACTTT
  ACGGAGTCTC TTACAATAGT GTCATTTTGA AAATCAAAAT GGTATTACAG ATAAAATCTG
  TAGTCTTGCC TTTTCCTCCT TCATGCCCAT TAACATCAGT TTCAACACCA TGAAAGATGA
  CAGTAATTAT AGGTATTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52449569	NES15419831	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49609836					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52449569	NES15419831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85148125 () rs orientation: forward

Symbol	Name	Function Class
D12Mit257	DNA Segment, Chr 12, Massachusetts Institute of Technology 257	839 bp distal
Gm38355	predicted gene, 38355	within coordinates
Prox2	prospero homeobox 2	within coordinates
Rr264587	regulatory region 264587	1812 bp proximal
Rr268707	regulatory region 268707	within coordinates
Rr269802	regulatory region 269802	286 bp proximal