rs49612396 SNP Detail

Summary

• ID
  rs49612396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88890281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCG CGGTAGGGTG CGCAGCTGTC
  Y
  CTGCGCGTCA CGTCGGGTGA GCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132549619	ENSMUSSNP6852770	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323783683	CHEV_11_88860769	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49612396					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88890281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	within coordinates
Gm11496	predicted gene 11496	24 bp upstream
Rr386439	regulatory region 386439	1154 bp downstream
Rr402858	regulatory region 402858	within coordinates
Trim25	tripartite motif-containing 25	within coordinates
Tssr104062	transcription start site region 104062	21 bp downstream
Tssr104063	transcription start site region 104063	within coordinates