rs49613260 SNP Detail

Summary

• ID
  rs49613260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:34724618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTTCACT CGGCAGCAGC
  ACTGCTAAGT AAGCGCCGGG GATTTTTGAA TACGGTTCCC GCGAGAACTC ACGTTTCTCA
  CGAGATGTCT TGTCCAATCC GCGCCTCCGG GGCAAACGAG TGGGGCGCCT TGCAGAGACT
  GCGCATGTGC ATGCTCCGCG ACTTGGGCTT TTGGGCGTTC CTGCTGCTTC GTTTTCTTAG
  R
  AGTGTCTGCT TTTAGTGAAG TGTGTTTCTC TGGTTTATTT ATTTGTTGTC GTCTTTACCA
  ACGCCAGTGT CGCCGGGTCG GAAGGTATTG TCAGCCCCTC GCTGGCCCGC CTGCAGTCGC
  CTTTAGGAGC TAAGGCGTTG AGTCTCACCA GGGCCAGCAC AGTGCCACCT TCCACTGGGC
  TCGCCCCAGT TAGGACTGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63335205	NES17512770	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49613260					SNP	A	A	A	A	A	A	G	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63335205	NES17512770	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34724618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	within coordinates
Gm57348	predicted gene, 57348	within coordinates
Rr402479	regulatory region 402479	within coordinates
Rr444978	regulatory region 444978	161 bp distal
Rr444979	regulatory region 444979	77 bp distal
Rr444980	regulatory region 444980	within coordinates
Spdl1	spindle apparatus coiled-coil protein 1	150 bp upstream
Tssr100930	transcription start site region 100930	19 bp downstream
Tssr100931	transcription start site region 100931	within coordinates
Tssr107398	transcription start site region 107398	195 bp upstream
Tssr107399	transcription start site region 107399	165 bp upstream
Tssr107400	transcription start site region 107400	128 bp upstream