rs49613390 SNP Detail

Summary

• ID
  rs49613390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93789120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGTTGT CAAAAAGAAA
  GAGGTGGCCC CACGGAAAGA GCGAGACCAG GACTGAACAC TCACACAGAA TTCTGTTTCC
  GGCCTGTCCT TCAGCCACAT TCTAGGCTAG ACCTCTTCCT GCTGAAGAGG ATGACCCCTC
  CCCTCCCCTG CCCCATGAGC ATCTACACCC ATTCTCCACC ATGGATAGCT TCCAGCCAGT
  R
  TATCGCTTTG GATTTAGGAA TTTCCTGTCG AGTTTATTGT AAGTGATGAC CCACAGGCTC
  TAAAGAACCC ATTTGCCCTT ATCTCTAAAA TATCCCTCAC CCAGTACCCA GGCCTTGCTC
  TCCCATGAAC AAGTCAGTAC CCAGGCCGTG CTCTCCCATG AACAAGTCAG TACCCAGGCT
  GTGCTCTCTC CCATGAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60510102	NES16529657	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49613390					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60510102	NES16529657	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93789120 () rs orientation: forward

Symbol	Name	Function Class
Cldn14	claudin 14	within coordinates
Rr324727	regulatory region 324727	1303 bp proximal