rs49613398 SNP Detail

Summary

• ID
  rs49613398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:39009655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATAACAA TAAATAAAAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAAATCTAT
  GAGGCTATAG AGAGAAGAAA GGGAAGAAGA AATGCTGTAG TCAGTATAAT CTGAAAAAAA
  AAGGTTTTGA AGAATTAAAG AAAACTTTTC TTCTAGGTCC CAAGCATTAT ATGACATGAC
  Y
  TTTAGGGAAA AATACATTAA ACAGGACTTA AAGTAACAAT TTACATTCTT TTTCAAACTT
  TACCACTGTA TTAGATTTTA TTGTGATTTT AAATTTTATT GCAATTCATG TGTTTGCTAT
  TTTTACATTT AGCTACATAT TACCTAGATA TTTATCATTA AAAATAATTT AATGCCTTTT
  TACACTAATA TTCATATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61383209	NES16759281	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C		T	T	C	T		T
ss322911113	CHEV_9_38905944	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49613398					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61383209	NES16759281	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:39009655 () rs orientation: forward

Symbol	Name	Function Class
Gm47085	predicted gene, 47085	744 bp downstream