rs49613793 SNP Detail

Summary

• ID
  rs49613793
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84069850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT CAAAAGGCTT GGAGCAACCC
  T
  AGTAAAGGAT GTAAAACAAT CTAAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132477363	ENSMUSSNP4274696	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323769369	CHEV_11_83992526	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49613793					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84069850 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	150 bp proximal
Rr453130	regulatory region 453130	within coordinates
Rr453131	regulatory region 453131	405 bp proximal
Rr453132	regulatory region 453132	952 bp proximal
Tssr103797	transcription start site region 103797	1371 bp downstream
Tssr103798	transcription start site region 103798	587 bp upstream
Tssr103799	transcription start site region 103799	634 bp upstream
Tssr103800	transcription start site region 103800	768 bp upstream
Tssr103801	transcription start site region 103801	828 bp upstream
Tssr103802	transcription start site region 103802	842 bp upstream
Tssr103803	transcription start site region 103803	1285 bp upstream