rs49614512 SNP Detail

Summary

• ID
  rs49614512
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:66951626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCGTAGG CCACAGAGAG
  GAATAAGAAA CCTGAAGTCC CGGTGCTTGC TTTCTTCCTC TTCTGTTTAG TCTAAGCAGT
  TCTCTATGAA GTAATGGCCT GGTGACTGAA AGAACAGAGA GAAGTATGGG AGGTCTCTGC
  AGTGCCTTAG TCCTCTTTAT GTTAAAATGC CACATAGAGT ATTAACACAC TACAGTCTCA
  R
  GTTTCCGGGA GGCCGATTAA GTGGAGAGGG AGGAAATGGT TAAAAAACTG AGGAGGGCTA
  AAGCCAGCTG GAGGCTCCTG GTGAGGAGCT CTGTAGGTCT GGTAGGTTGC CACTGTGCTG
  TGTGGAAGCA GGCTTACATC AGCCAAAGCA AACGTTCCCC TATCTTACTC TGGGTGGTGG
  CTGTAGCCTA CTGAGACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61283859	NES16894927	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		A	A	A		G
ss323345118	CHEV_10_66578595	CHEVERUD	SCREENING_POP	f	SNP				G				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49614512					SNP	G	G	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61283859	NES16894927	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:66951626 () rs orientation: forward

Symbol	Name	Function Class
Jmjd1c	jumonji domain containing 1C	within coordinates
Rr215832	regulatory region 215832	826 bp distal
Rr215833	regulatory region 215833	1975 bp proximal