rs49615120 SNP Detail

Summary

• ID
  rs49615120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:102336549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTGTCC TCCAAAGAGG
  TCTGCTGTCG CCTCCTTCTC TAAGCAGCTG TGGAGGCGCG GGGCTCCAGC GGTCCAATCC
  GCAGCGTAGG AAGCAGCGGG GCGCTCGCCC GCCGCCGGAA GCCGCGATAG CAGCGGGGGC
  GAGGGACCCA AGGCAAGAGC CGCGCCCGGA GCTGCAGGAC CCACCCACTG CGCCGGAACC
  R
  ACGAATCACT TCTGCACTCA GAGTGGCCTG ATTGGCTGTT CGCTTGCCAC GTTTCCTGGT
  TGAATTCAGC TACCTAGCGT GGGTGCGCAG CCGGGCTTCC TTAAGTGGCA CCTTTACGCA
  TTGGAATCCG CAGTTCCCTG GAACACGAGC TGCAAGTGGC TGCTCCAGGT TTCAGACAAT
  TAAGCAAAAG TTTTAATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61043690	NES16084967	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49615120					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61043690	NES16084967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:102336549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19528	CpG island 19528	within coordinates
Gm45527	predicted gene 45527	1123 bp upstream
Rr652623	regulatory region 652623	83 bp distal
Rr652624	regulatory region 652624	within coordinates
Trim68	tripartite motif-containing 68	15 bp upstream
Tssr73953	transcription start site region 73953	44 bp upstream