rs49615386 SNP Detail

Summary

• ID
  rs49615386
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19244045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGG AGGCAGAGGC AGGCGGATTT
  C
  TGAGTTTGAG GCCAGCCTAG TCTAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148477899	ENSMUSSNP1270112	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49615386					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19244045 () rs orientation: forward

Symbol	Name	Function Class
Bloc1s3	biogenesis of lysosomal organelles complex-1, subunit 3	1750 bp upstream
Cpgi18495	CpG island 18495	988 bp distal
Gm74038	predicted gene, 74038	1984 bp downstream
Rr155320	regulatory region 155320	1956 bp proximal
Rr167175	regulatory region 167175	44 bp distal
Rr400150	regulatory region 400150	1297 bp downstream
Trappc6a	trafficking protein particle complex 6A	within coordinates
Tssr64864	transcription start site region 64864	1379 bp downstream
Tssr64865	transcription start site region 64865	1366 bp downstream
Tssr64866	transcription start site region 64866	1349 bp downstream
Tssr70925	transcription start site region 70925	1816 bp upstream
Tssr70926	transcription start site region 70926	1743 bp upstream
Tssr70927	transcription start site region 70927	1731 bp upstream