rs49616422 SNP Detail

Summary

• ID
  rs49616422
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191225430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT GGAGAGAGCA GACATGGCAG
  S
  AGAGTCTCAG TCTCAGATGC CTCCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146507148	ENSMUSSNP6164530	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49616422					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191225430 () rs orientation: forward

Symbol	Name	Function Class
D1Mit209	DNA segment, Chr 1, Massachusetts Institute of Technology 209	33 bp distal
Gm37432	predicted gene, 37432	within coordinates
Rr426168	regulatory region 426168	220 bp proximal
Rr426169	regulatory region 426169	1247 bp proximal
Rr426170	regulatory region 426170	1706 bp proximal
Rr426171	regulatory region 426171	1927 bp proximal