rs49616461 SNP Detail

Summary

• ID
  rs49616461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98852808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGCCAG CCCTGCTGCA
  GTTTTATGTA GTTCCCTGAA TTCTGTAAAT AGCCCCTTCC GCAGCTGGGC TTCTGACTGT
  GGGAACTGTA GCTGCTCTCC CCAAGGCTGC TCAGCCAGAG ACTGTGGTCC TTGCTCAATT
  GCCCCTTGGG ACAAAAATGC CTTGCTTTCA CTCCTAGGAA ATAGATTACA GTGGCACTCT
  Y
  TTGCTATGTA GAAAGGCTCC GTTGTCAGCA AGGAAGATCT CTATATAGTG AGTCTCCGAG
  CTGCGGACCA CTGATAATTT GCAGGATGAA ATTTTAGAGG AAAAGAGATA TTTGTTTGGG
  CACCGAGCTA AAAATGTGGA TTTTGACAGA TGGCTTCCCT TTCAGTAGCA GAGTCTTGGT
  CGCCCGCAGC TCTGTTTGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63622718	NES17045864	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49616461					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63622718	NES17045864	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98852808 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	454 bp upstream
Cpgi7685	CpG island 7685	1211 bp distal
Gm49450	predicted gene, 49450	1376 bp upstream
Gm56698	predicted gene, 56698	within coordinates
Rr370012	regulatory region 370012	1600 bp downstream
Rr404613	regulatory region 404613	1156 bp downstream
Rr509236	regulatory region 509236	1660 bp distal
Rr509237	regulatory region 509237	1387 bp distal
Rr509238	regulatory region 509238	1267 bp distal
Rr509239	regulatory region 509239	734 bp distal
Rr509240	regulatory region 509240	267 bp proximal
Tssr132970	transcription start site region 132970	1853 bp downstream
Tssr132971	transcription start site region 132971	1158 bp downstream
Tssr136334	transcription start site region 136334	1408 bp upstream
Tssr136335	transcription start site region 136335	1394 bp upstream
Tssr136336	transcription start site region 136336	1367 bp upstream
Tssr136337	transcription start site region 136337	1336 bp upstream
Tssr136338	transcription start site region 136338	1320 bp upstream
Tssr136339	transcription start site region 136339	1268 bp upstream
Tssr136340	transcription start site region 136340	1251 bp upstream
Tssr136341	transcription start site region 136341	1228 bp upstream
Tssr136342	transcription start site region 136342	532 bp downstream
Tuba1a	tubulin, alpha 1A	1426 bp upstream