rs49617163 SNP Detail

Summary

• ID
  rs49617163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:64508075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTCCTTG CCCCTTCTTG
  CTCATGACTC AGATCCCTAG ACTCTTCTCA AGCTATTTTC TGTTTGTCTT TCTTTGTTTG
  GTTGGTTCCA TACTTAGGAA GTATCACTGA AGGCCTGGGC TTTAAAAGTA TGTGTACAAG
  TTACCACCCT GTCTTCCCAA CTGGACCCTT GGGCACTGCC CTGTTGAATG CATGTGGGTA
  Y
  TAACAGATGC CCAATACACA GTAGAGAGGG GCCTAGGGCA TGTGAGGCCC TGTGCTAGGT
  GTTATGGGAG AGATGAAAGG ACATGGCACA ACCCCAGGGA AATGACAGCC AATGGGAGGA
  CCCTTTACTG GTAACTACTC CTGCTTCCCA ACCCGCCCAG TCAAGCAGTC AATGTGTTTG
  GCTGTTTTGG TTTTTGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62424189	NES17252552	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49617163					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62424189	NES17252552	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:64508075 () rs orientation: forward

Symbol	Name	Function Class
Gm41176	predicted gene, 41176	within coordinates
Msra	methionine sulfoxide reductase A	Intron
Rr369847	regulatory region 369847	1678 bp upstream
Rr493865	regulatory region 493865	1430 bp proximal