rs49617219 SNP Detail

Summary

• ID
  rs49617219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164267152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAAATAAT AAGACACGTC AGGAAGGCAA ATGCGTGATC
  CACCTTGTCA ATCTGAGACA ACTTAGATCT GTTTGAAGTG AGCACTACAA ACGAGCTGTG
  R
  CACAGCCTAC TACTGTAGCT AACACAGCGC CAGCCTACTG TAAACCTGAC TAGGGACAAT
  GAGAAGCTAA CTGGGTGCCT GCTAAGATGG CAGTCACCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145978631	ENSMUSSNP2561055	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49617219					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164267152 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	Intron
Tssr9784	transcription start site region 9784	1076 bp downstream
Tssr14732	transcription start site region 14732	1823 bp upstream
Tssr14733	transcription start site region 14733	1724 bp upstream
Tssr14734	transcription start site region 14734	1679 bp upstream
Tssr14735	transcription start site region 14735	1625 bp upstream
Tssr14736	transcription start site region 14736	1584 bp upstream
Tssr14737	transcription start site region 14737	1524 bp upstream
Tssr14738	transcription start site region 14738	1388 bp upstream
Tssr14739	transcription start site region 14739	1204 bp upstream
Tssr14740	transcription start site region 14740	1163 bp upstream
Tssr14741	transcription start site region 14741	1086 bp upstream
Tssr14742	transcription start site region 14742	1044 bp upstream
Tssr14743	transcription start site region 14743	1975 bp downstream