rs49617619 SNP Detail

Summary

• ID
  rs49617619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:79218120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAGTTAG CTTCTTGCTG
  TTGCGAGAAA TATTAAAAAT AAAGCCGCCA AGTTCCCAAG TTCCAACCAG CTACTCTCTG
  CCCACCAACT CTCTGGCAGG GGACGGCGCT TCCAAGTTCC TTTTGCTGTC ACACCAGCCC
  CACAGAATGA CCATCCATTC CACAGTCACC CAGCAACCGG TAGAAACAAA ACTCTAGAAG
  Y
  TTATAATTAA TAAATCAGAT TTATATATCA ATAAATTCTC AATTCACAAG ATGCCCACAC
  AATAATTTCA GGGCCAATTG ATAATGGTAC AAGCTGCCCA CCTAGATTAG ACAAGCTATC
  CCAATTATTC TAACCGTTAT GATGTCATAT CTACTGTGGC TTTTAAATCC ACACTGGTTC
  AGGATCTTCT TCCTGTCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146042170	ENSMUSSNP4331938	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49617619					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79218120 () rs orientation: forward

Symbol	Name	Function Class
Rr392977	regulatory region 392977	1851 bp upstream