rs49618371 SNP Detail

Summary

• ID
  rs49618371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60699916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG TGGCTCCCAC GCCTCTCCCC
  R
  GAGTGTCCCA CCTGGTGGGG TTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132265180	ENSMUSSNP4380003	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49618371					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60699916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	1800 bp proximal
Rr448484	regulatory region 448484	461 bp distal
Rr448485	regulatory region 448485	74 bp distal
Rr448486	regulatory region 448486	1613 bp proximal
Shmt1	serine hydroxymethyltransferase 1 (soluble)	within coordinates
Tssr108307	transcription start site region 108307	260 bp upstream
Tssr108308	transcription start site region 108308	215 bp upstream
Tssr108309	transcription start site region 108309	1934 bp downstream