rs49619695 SNP Detail

Summary

• ID
  rs49619695
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40553641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTTAAA GCCTGAGTTT
  CCTGTGGTGA CTAAGACCTT CATCTGATCC CAAATCTCCT GTGGTTCATG ATGTCCTGCT
  TTTCTCTTCC AAAAACAGTT TATAAAGGAC ACATTAAGCT TCGAAGGAAA AGCTGTTGAT
  GAATTCACTT CAGGAGACCA CACTGGCAGT AACTTTGGGC TTAACTTTAA GGTCTATATT
  A
  AGATCTCTGA GGTTTGATAA GGACACTCCC AACGCCCAGG CACTCTGAAT GTACCTCAGC
  CTGAATTAAA CCATTATCAT GAACAATGCC TGGTCTATCC GTTTCCCCTT CATCCTCAGT
  ATTCCTCCTT TAATCCCATT TAGATTTTGG ATTACTGGGC TGTCCCTGTC ACACCCTGGG
  AGTCTAAGCT CATGTGCCCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss148982856	ENSMUSSNP3857889	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs49619695					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40553641 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	907 bp upstream
Rr410075	regulatory region 410075	433 bp proximal
Rr410076	regulatory region 410076	892 bp proximal
Tssr65	transcription start site region 65	1014 bp upstream
Tssr6477	transcription start site region 6477	896 bp upstream
Tssr6478	transcription start site region 6478	961 bp upstream
Tssr6479	transcription start site region 6479	990 bp upstream
Tssr11438	transcription start site region 11438	734 bp downstream
Tssr11439	transcription start site region 11439	1966 bp downstream
Tssr11440	transcription start site region 11440	1976 bp downstream
Tssr11441	transcription start site region 11441	1994 bp downstream