rs49620131 SNP Detail

Summary

• ID
  rs49620131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97238414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACCCACC AACCCCAAGA
  CGGAAAATTC AAACAAGTAT CGAGGACGTC AGAAGCTAAT TTAGACCAGC TTAGGGGGTC
  TCTTTCTTTA GGGCCATGAC TGAAAGGGGT GAGTTTTACA CTTGGGCCAT TTGGAAAACA
  GGTGACACAA AGGAGACTGG TCACACAAGT AAATGACATT AGACAACCGG AAGGTACCAG
  Y
  GCCGTTAGGA TACGAACTTG TGCCAATTAG GGACACATGA TGTAACTACA GTTCAAATTT
  TCCCAAAACC TAAGTCAAAT GTACTTTTCA GTCGTGGTGA CGAGTACTTG AGGGAGACAA
  CGGAGGGGAA AGAGAAAGAT CTGTTTGACC TCATGGGGTT AGACATTTTG GTCCATGGTT
  GGCTGGCCTG AGGGCTGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63608789	NES17040704	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49620131					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63608789	NES17040704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97238414 () rs orientation: forward

Symbol	Name	Function Class
Gm33325	predicted gene, 33325	within coordinates
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr404591	regulatory region 404591	1870 bp upstream
Rr508792	regulatory region 508792	1147 bp distal
Rr508793	regulatory region 508793	1823 bp proximal