rs49620334 SNP Detail

Summary

• ID
  rs49620334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:6413641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACAATTT TATATAATAT
  ATTTTGTTCA TATTTTCCCC TCCCCCAACC TCCTCGAAAT ATTTTCTACC AGTCCTTTGT
  CAGATACATG TTGTGAATAT TTTCCTAGCT CGTGCTTTGT GCTTTTGCTT TCTGTGGTGT
  CACCTTTGAT GAAATACAAG TTTTTGGGTT CTTTTGTGAT TTCTGACTTT CGCATCCTTC
  Y
  CAAGAAGCCT CTACCCACTT CAAGGTCACA AATACTATTC CTAGGAATTC TTCGACCAGT
  TTCACTTTCT AAACTCTCTA GGCCCATGAT CTATACGTTT TAGGGAGTAT TTATATCAGT
  AAAATTGTTT TCAGCATACA TACCCAATAA AATGAATTTT ACTTGTGGAT AATAGAATGC
  ATGTTTAATG ACTTTAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss134083018	ENSMUSSNP1145662	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs49620334					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:6413641 () rs orientation: forward

Symbol	Name	Function Class
5430428K19Rik	RIKEN cDNA 5430428K19 gene	within coordinates
DXMit203	DNA Segment, Chr X Massachusetts Institute of Technology 203	1324 bp proximal
Shroom4	shroom family member 4	within coordinates